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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col4a1, collagen, type IV, alpha 1
Sequence ID:NM_009931
Entrez Gene ID:12826
Ensembl ID:ENSMUSG00000031502

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 A1.1|8 5.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:8: 11245001 - 11245605

 Exon Info From UCSC:
NM_009931

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6852661Full LengthBC072650collagen, type IV, alpha 1
3495898IncompleteBC002269collagen, type IV, alpha 1
4988212IncompleteBC056620collagen, type IV, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034061  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009931 NP_034061 P02463 Collagen
C4

Related Sequences

 
mRNAGenPeptSwissProt
M15832 AAA37340 P02463
M14042 AAA37342 P02463
J03758 AAA37439 P02463
J04694 AAA50292 P02463
BC002269 AAH02269 P02463
BC056620 AAH56620 P02463
BC072650 AAH72650 P02463
AK142097 BAE24936 P02463
AK146487 BAE27208 P02463
AK147284 BAE27820 P02463
AK147355 BAE27863 P02463
AK147661 BAE28055 P02463
X02201 CAA26132 P02463
X06777 CAA29946 P02463

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col4a1 NP_034061 R.norvegicus Col4a1 290905   NP_001128481 98
H.sapiens COL4A1 1282 Gene Info NP_001836 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta