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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col5a1, collagen, type V, alpha 1
Sequence ID:NM_015734
Entrez Gene ID:12831
Ensembl ID:ENSMUSG00000026837

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 A2-B|2 18.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 27886684 - 28037524

 Exon Info From UCSC:
NM_015734

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861467Full LengthBC138447collagen, type V, alpha 1
8861469Full LengthBC138449collagen, type V, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056549  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015734 NP_056549 O88207 Collagen
COLFI
Laminin_G_2

Related Sequences

 
mRNAGenPeptSwissProt
BC138447 AAI38448 B1AWB9
O88207
BC138449 AAI38450 B1AWB9
AB009993 BAA28786 O88207
AK148055 BAE28315 O88207

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col5a1 NP_056549 R.norvegicus Col5a1 85490   NP_604447 98
H.sapiens COL5A1 1289 Gene Info NP_000084 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)