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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nxf1, nuclear RNA export factor 1
Sequence ID:NM_016813
Entrez Gene ID:53319
Ensembl ID:ENSMUSG00000010097

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19 A|19 5.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:19: 8757126 - 8770684

 Exon Info From UCSC:
NM_016813

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3710546Full LengthBC005594nuclear RNA export factor 1 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058093  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016813 NP_058093 Q99JX7 NTF2
TAP_C

Related Sequences

 
mRNAGenPeptSwissProt
AF093140 AAC63368 Q99JX7
BC005594 AAH05594 Q99JX7
AK077644 BAC36922 Q8BP60
AK133883 BAE21911 Q99JX7
AK167518 BAE39590 Q99JX7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nxf1 NP_058093 R.norvegicus Nxf1 59087   NP_067590 92
H.sapiens NXF1 10482 Gene Info NP_006353 91
A.gambiae AgaP_AGAP002193 1269364   XP_307993 41
D.melanogaster sbr 43944   NP_524660 36
S.pombe mex67 2540727   NP_595996 31
C.elegans nxf-1 191736   NP_506567 31
C.elegans nxf-2 179938   NP_506568 30
S.cerevisiae MEX67 855934   NP_015156 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)