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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sox21, SRY-box containing gene 21
Sequence ID:NM_177753
Entrez Gene ID:223227
Ensembl ID:ENSMUSG00000061517

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14 E4|14

Chromosomal Position (from UCSC)

Chromosomal Position:14: 118234124 - 118235848

NM_177753 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
43798118632457118636251

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9056548Full LengthBC147556SRY-box containing gene 21
9056555Full LengthBC147565SRY-box containing gene 21
5707035IncompleteBC063054SRY-box containing gene 21

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_808421  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_177753 NP_808421 Q811W0 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC063054 AAH63054 Q6P569
BC069176 AAH69176 Q811W0
BC147556 AAI47557 Q811W0
BC147565 AAI47566 Q811W0
AY069926 AAL49967 Q811W0
AY142959 AAN60055 Q811W0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sox21 NP_808421 H.sapiens SOX21 11166 Gene Info NP_009015 100
A.gambiae AgaP_AGAP010922 4577582   XP_001230649 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)