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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Acss1, Acyl-CoA synthetase short-chain family member 1
Sequence ID:NM_080575
Entrez Gene ID:68738
Ensembl ID:ENSMUSG00000027452

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 G3|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 150618110 - 150668229

 Exon Info From UCSC:
NM_080575

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3710505Full LengthBC092278acyl-CoA synthetase short-chain family member 1
4911679Full LengthBC030930acyl-CoA synthetase short-chain family member 1
3594204IncompleteBC004097acyl-CoA synthetase short-chain family member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_542142  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_080575 NP_542142 Q99NB1
Q569W4
EC 6.2.1.1 AMP-binding

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC004097 AAH04097 Q99KM8  
BC030930 AAH30930 Q99NB1 EC 6.2.1.1
BC092278 AAH92278 Q99NB1
Q569W4
EC 6.2.1.1
AB046742 BAB21612 Q99NB1
Q569W4
EC 6.2.1.1
AK088244 BAC40232 Q99NB1
Q569W4
EC 6.2.1.1
AK173275 BAD32553 Q69Z91  
AK146568 BAE27266 Q99NB1
Q569W4
EC 6.2.1.1
AK158119 BAE34365 Q3TZ45  
AK172412 BAE42994 Q99NB1
Q569W4
EC 6.2.1.1
AK172470 BAE43023 Q99NB1
Q569W4
EC 6.2.1.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Acss1 NP_542142 R.norvegicus Acss1 296259   NP_001099994 96
H.sapiens ACSS1 84532 Gene Info NP_115890 88
S.cerevisiae ACS2 850846   NP_013254 49
N.crassa NCU06836 3879801   XP_963677 49
S.pombe SPCC191.02c 2539546   NP_588291 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)