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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rps16, Ribosomal protein S16
Sequence ID:NM_013647
Entrez Gene ID:20055
Ensembl ID:ENSMUSG00000037563

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A3|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 28350749 - 28352695

NM_013647 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11632913570729135869
1642652913601029136111
2663622913719529137291
3634102913738129137428
4116152913751229137716

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5713263Full LengthBC090618ribosomal protein S16
40104131Full LengthBC115673ribosomal protein S16
40104132Full LengthBC115674ribosomal protein S16
6438016IncompleteBC082286ribosomal protein S16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038675  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013647 NP_038675   Ribosomal_S9

Related Sequences

 
mRNAGenPeptSwissProt
BC082286 AAH82286 Q641N3
BC090618 AAH90618 Q5CZY9
BC115673 AAI15674 A4FUS1
BC115674 AAI15675 A4FUS1
AK010613 BAB27062 P14131
AK010641 BAB27083 P14131
AK011060 BAB27368 P14131
AK019400 BAB31702 P14131
AK083946 BAC39077 P14131
AK088413 BAC40341 P14131
AK088716 BAC40524 P14131
AK150808 BAE29871 P14131
AK168207 BAE40167 P14131
AK169328 BAE41081 P14131

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rps16 NP_038675 H.sapiens RPS16 6217 Gene Info NP_001011 100
R.norvegicus Rps16 140655   XP_341816 100
D.melanogaster RpS16 37580   NP_611685 89
A.gambiae AgaP_AGAP011424 1278269   XP_317881 82
C.elegans rps-16 179998   NP_506690 77
A.thaliana AT5G18380 831956   NP_197339 74
A.thaliana AT3G04230 819578   NP_187073 73
A.thaliana AT2G09990 815456   NP_178826 73
S.pombe rps1601 2540812   NP_595738 72
S.pombe rps1602 2543559   NP_593452 72
N.crassa NCU08620 3880988   XP_964828 69
S.cerevisiae RPS16B 851476   NP_010200 66
S.cerevisiae RPS16A 855174   NP_013863 66
P.falciparum PF08_0076 2655275   XP_001349386 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)