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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Aff1, AF4/FMR2 family, member 1
Sequence ID:NM_001080798
NM_133919
Entrez Gene ID:17355
Ensembl ID:ENSMUSG00000029313

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 E|5 56.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 103783124 - 103850937

 Exon Info From UCSC:
NM_001080798
NM_133919

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40110795Full LengthBC131665AF4/FMR2 family, member 1
3585849IncompleteBC018434AF4/FMR2 family, member 1
5348125IncompleteBC085290AF4/FMR2 family, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598680  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001080798 NP_001074267    
NM_133919 NP_598680 O88573 AF-4

Related Sequences

 
mRNAGenPeptSwissProt
AF013131 AAB82427 O35233
AF074266 AAD08668 O88573
BC131665 AAI31666 A3KMF4
AY749168 AAU93698 Q5XM34
AK030884 BAC27171 Q8CDA0
AK142554 BAE25103 Q3UQD9
AK143742 BAE25520 Q3UP77

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Aff1 NP_001074267 R.norvegicus Aff1 305152   NP_001100676 87
H.sapiens AFF1 4299 Gene Info NP_005926 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)