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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Atf1, activating transcription factor 1
Sequence ID:NM_007497
Entrez Gene ID:11908
Ensembl ID:ENSMUSG00000023027

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F3|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 100227978 - 100260327

NM_007497 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1224100058289100058512
225323100063163100063261
324424100075675100075775
425555100082499100082629
556735100084524100084703
736895100084784100084943
8962329100090245100091678

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2646620Full LengthBC006871activating transcription factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031523  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007497 NP_031523 Q922R4
P81269
bZIP_1
pKID

Related Sequences

 
mRNAGenPeptSwissProt
M63725 AAA40395 P81269
BC006871 AAH06871 Q922R4
AK010428 BAB26930 Q9CWS2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atf1 NP_031523 M.musculus Gm1862 100040260 Gene Info XP_001474867 97
R.norvegicus Atf1 315305   NP_001094365 95
H.sapiens ATF1 466 Gene Info NP_005162 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta