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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sox30, SRY-box containing gene 30
Sequence ID:NM_173384
Entrez Gene ID:214105
Ensembl ID:ENSMUSG00000040489

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B1.1|11 21.0

Chromosomal Position (from UCSC)

Chromosomal Position:11: 45980309 - 46017993

NM_173384 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
110644579381145794874
106513044579682045797059
130514844579821845798397
148519774580512045805612
197829954583047645831493

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100061550BC156193SRY-box containing gene 30

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775560  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_173384 NP_775560 Q8CGW4 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
AY005801 AAF99391 Q8CGW4
BC156193 AAI56194  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sox30 NP_775560 R.norvegicus Sox30 689918   XP_001072526 98
H.sapiens SOX30 11063 Gene Info NP_848511 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)