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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Stx6, syntaxin 6
Sequence ID:NM_021433
Entrez Gene ID:58244
Ensembl ID:ENSMUSG00000026470

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 G3|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 155158892 - 155202016

NM_021433 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1225157005832157006056
226395157021115157021284
396490157024983157025077
491553157034907157034969
554679157038558157038683
680786157040348157040454
787881157044470157044564
8822459157049069157050646

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4039560Full LengthBC029205syntaxin 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067408  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021433 NP_067408 Q9JKK1 SNARE

Related Sequences

 
mRNAGenPeptSwissProt
AF237814 AAF40221 Q9JKK1
BC029205 AAH29205 Q9JKK1
AK009690 BAB26441 Q9JKK1
AK018167 BAB31104 Q4W8V2
AK019106 BAB31549 Q9JKK1
AK031673 BAC27505 Q9JKK1
AK044905 BAC32135 Q9JKK1
AK049124 BAC33556 Q9JKK1
AK151549 BAE30494 Q3UA21
AK159392 BAE35046 Q3TX70
AK163167 BAE37217 Q3TR14

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Stx6 NP_067408 R.norvegicus Stx6 60562   NP_113853 98
H.sapiens STX6 10228 Gene Info NP_005810 95
A.gambiae AgaP_AGAP006251 1276910   XP_316317 59
D.melanogaster Syx6 40373   NP_995814 54
A.thaliana SYP61 839749   NP_564310 29
N.crassa NCU01199 3877688   XP_961565 28
S.pombe tlg1 2540973   NP_595989 27
S.cerevisiae TLG1 852079   NP_010756 24

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)