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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sox2, SRY-box containing gene 2
Sequence ID:NM_011443
Entrez Gene ID:20674
Ensembl ID:ENSMUSG00000074637

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 A2-B|3 15.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 34650404 - 34651390

NM_011443 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
124563454892634551381

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6413283Full LengthBC057574SRY-box containing gene 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035573  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011443 NP_035573 P48432 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
U31967 AAC31791 P48432
BC057574 AAH57574 Q60I23
AB108673 BAC75668 Q60I23
AK131933 BAE20882 Q3V2B6
AK149358 BAE28833 Q3UES8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sox2 NP_035573 R.norvegicus Sox2 499593   NP_001102651 100
H.sapiens SOX2 6657 Gene Info NP_003097 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)