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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. S100a13, S100 calcium binding protein A13
Sequence ID:NM_009113
Entrez Gene ID:20196

Database Links

UniGeneEntrez GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, brain, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, pooled tissue, prostate, stomach, thymus, thyroid, uncharacterized tissue
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F1-F2|3 43.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 90514928 - 90524578

NM_009113 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12609031868190318940
2614539031977190319963
4546829032827490328502

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3155915Full LengthBC005687S100 calcium binding protein A13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033139  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009113 NP_033139 P97352
Q545H7
S_100

Related Sequences

 
mRNAGenPeptSwissProt
BC005687 AAH05687 P97352
Q545H7
AK002755 BAB22332 P97352
Q545H7
AK008895 BAB25958 P97352
Q545H7
X99921 CAA68189 P97352
Q545H7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus S100a13 NP_033139 R.norvegicus S100a13 295213   XP_215607 87
H.sapiens S100A13 6284 Gene Info NP_001019381 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)