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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prnp, prion protein
Sequence ID:NM_011170
Entrez Gene ID:19122
Ensembl ID:ENSMUSG00000079037

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 F2|2 75.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 131909967 - 131918264

NM_011170 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
176131735663131735738
77174131737930131738027
1752186131762155131764166

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3583938Full LengthBC006703prion protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035300  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011170 NP_035300 Q4FJQ7
P04925
Prion
Prion_octapep

Related Sequences

 
mRNAGenPeptSwissProt
M13685 AAA39996 P04925
M30384 AAA39999 P04925
BC006703 AAH06703 Q4FJQ7
P04925
AK148061 BAE28320 Q3UG89
AK148892 BAE28693 Q3UF68
AK150963 BAE29994 Q3UBH0
AK157840 BAE34221 Q3TZI7
AK158908 BAE34724 Q4FJQ7
P04925
AK159056 BAE34788 Q4FJQ7
P04925
AK159224 BAE34911 Q4FJQ7
P04925
AK160091 BAE35622 Q4FJQ7
P04925
AK162504 BAE36950 Q4FJQ7
P04925
CT010345 CAJ18553 Q4FJQ7
P04925

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prnp NP_035300 R.norvegicus Prnp 24686   NP_036763 97
H.sapiens PRNP 5621 Gene Info NP_000302 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta