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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Irf5, interferon regulatory factor 5
Sequence ID:NM_001252382
NM_012057
Entrez Gene ID:27056
Ensembl ID:ENSMUSG00000029771

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 A3.3|6 7.1 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 29526732 - 29537319

Transcript StartTranscript EndChromosomal Start Chromosomal End
1422947673229476773
432482948112529481330
2494382948395129484140
4394972948453429484592
4985312948504029485073
5327892948525229485509
79011822948572429486116
118313012948620329486321
130220812948653929487318

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063924Full LengthBC160276interferon regulatory factor 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036187  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001252382 NP_001239311    
NM_012057 NP_036187 Q3U169
P56477
IRF

Related Sequences

 
mRNAGenPeptSwissProt
AF028725 AAB81997 Q3U169
P56477
BC160276 AAI60276  
EU401974 ACA81530 B2CC69
AK151019 BAE30037 Q3U169
P56477
AK156220 BAE33631 Q3U169
P56477

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Irf5 NP_036187 R.norvegicus Irf5 296953   NP_001100056 97
H.sapiens IRF5 3663 Gene Info NP_001092099 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)