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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Stim1, stromal interaction molecule 1
Sequence ID:NM_009287
Entrez Gene ID:20866
Ensembl ID:ENSMUSG00000030987

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 E3|7 50.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 102267805 - 102436848

 Exon Info From UCSC:
NM_009287

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4191156Full LengthBC021644stromal interaction molecule 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033313  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009287 NP_033313 P70302 SAM_2

Related Sequences

 
mRNAGenPeptSwissProt
U47323 AAC52715 P70302
BC021644 AAH21644 P70302
AK041944 BAC31106 P70302
AK160523 BAE35842 Q3TUX9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Stim1 NP_033313 R.norvegicus Stim1 361618   NP_001101966 99
H.sapiens STIM1 6786 Gene Info NP_003147 97
A.gambiae AgaP_AGAP000175 1272088   XP_310961 44
D.melanogaster Stim 32556   NP_523357 43
C.elegans stim-1 175201   NP_741073 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)