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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rps15, ribosomal protein S15
Sequence ID:NM_009091
Entrez Gene ID:20054
Ensembl ID:ENSMUSG00000063457

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 C1|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 80292460 - 80294112

NM_009091 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1537975517579755227
541397975551979755604
1403747975638679756620
3755217975671179756857

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1179896Full LengthBC094409ribosomal protein S15
4234356Full LengthBC010763ribosomal protein S15

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033117  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009091 NP_033117 P62843 Ribosomal_S19

Related Sequences

 
mRNAGenPeptSwissProt
M33330 AAA40055 P62843
BC010763 AAH10763 P62843
BC094409 AAH94409 P62843
AK135319 BAE22487 Q3UXS6
AK146147 BAE26932 Q3UK70

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rps15 NP_033117 H.sapiens RPS15 6209 Gene Info NP_001009 100
R.norvegicus Rps15 29285   NP_058847 100
A.gambiae AgaP_AGAP001274 1281904   XP_321877 78
D.melanogaster RpS15 36851   NP_725591 77
A.thaliana AT5G43640 834384   NP_199177 75
A.thaliana AT5G09500 830809   NP_196512 74
A.thaliana RPS15 839564   NP_171923 74
A.thaliana AT5G09510 830810   NP_196513 74
C.elegans rps-15 172693   NP_492384 74
S.pombe rps1502 2542912   NP_594357 74
S.pombe rps1501 2538892   NP_587961 74
N.crassa NCU00971 3881300   XP_965164 73
A.thaliana AT5G09490 830808   NP_196511 72
P.falciparum MAL13P1.92 813983   XP_001349914 66
S.cerevisiae RPS15 854117   NP_014602 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)