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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Itgb5, integrin beta 5
Sequence ID:NM_001145884
NM_010580
Entrez Gene ID:16419
Ensembl ID:ENSMUSG00000022817

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 B3|16

Chromosomal Position (from UCSC)

Chromosomal Position:16: 33829664 - 33949145

 Exon Info From UCSC:
NM_001145884
NM_010580

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6313668Full LengthBC058246integrin beta 5
6394641Full LengthBC046280integrin beta 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034710  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145884 NP_001139356    
NM_010580 NP_034710   EGF
Integrin_beta
Integrin_B_tail
EGF_2

Related Sequences

 
mRNAGenPeptSwissProt
AF043256 AAC40109 O70309
AF043257 AAC40110 O70309
AF022110 AAD08782 O70309
BC046280 AAH46280 Q6PE70
BC058246 AAH58246 Q6PE70
AK140251 BAE24299 Q6PE70

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Itgb5 NP_001139356 R.norvegicus Itgb5 257645   NP_671480 97
H.sapiens ITGB5 3693 Gene Info NP_002204 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)