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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Slc1a6, solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
Sequence ID:NM_009200
Entrez Gene ID:20513
Ensembl ID:ENSMUSG00000005357

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 C1|10 42.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 78780495 - 78814764

NM_009200 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11867824324078243425
1873897825050678250708
3905277825170378251840
5287327825390978254113
7337757825603478256076
77611197825866878259011
112013537826277378263006
135415487826454678264740
154916837827554678275680
168420897827716478277569

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861139Full LengthBC138120solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
8861159Full LengthBC138140solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033226  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009200 NP_033226 O35544 SDF

Related Sequences

 
mRNAGenPeptSwissProt
BC138120 AAI38121 B2RQX4
BC138140 AAI38141 B2RQX4
D83262 BAA23640 O35544
AK159197 BAE34892 Q3TXM3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc1a6 NP_033226 R.norvegicus Slc1a6 84012   NP_114454 99
H.sapiens SLC1A6 6511 Gene Info NP_005062 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)