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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Stx1a, syntaxin 1A (brain)
Sequence ID:NM_016801
Entrez Gene ID:20907
Ensembl ID:ENSMUSG00000007207

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G2|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 135041130 - 135051099

NM_016801 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
139135499441135499479
40117135512995135513072
118217135513345135513444
218292135517106135517180
293366135517800135517873
367475135517978135518086
476549135518462135518535
550687135521466135521603
688798135524863135524973
7992071135525696135526968

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6595634Full LengthBC100446syntaxin 1A (brain)
6309279IncompleteBC047133syntaxin 1A (brain)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058081  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016801 NP_058081 Q497P1
Q5D0A4
O35526
Syntaxin
SNARE

Related Sequences

 
mRNAGenPeptSwissProt
BC047133 AAH47133 Q497P1
Q5D0A4
O35526
BC100446 AAI00447 Q497P1
Q5D0A4
O35526
D45208 BAA28865 Q497P1
Q5D0A4
O35526

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Stx1a NP_058081 R.norvegicus LOC100360064 100360064   XP_002728031 100
R.norvegicus Stx1a 116470   NP_446240 100
H.sapiens STX1A 6804 Gene Info NP_004594 99
D.melanogaster Syx1A 42854   NP_001189276 71
A.gambiae AgaP_AGAP007698 1269535   XP_001687859 69
C.elegans unc-64 176743   NP_001022615 67
S.cerevisiae SSO2 855221   NP_013908 31
S.cerevisiae SSO1 855844   NP_015092 30
S.pombe psy1 2539377   NP_588053 30
A.thaliana SYP131 821141   NP_187030 27
A.thaliana SYP132 830702   NP_568187 25

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)