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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Capn1, calpain 1
Sequence ID:NM_001110504
NM_007600
Entrez Gene ID:12333
Ensembl ID:ENSMUSG00000024942

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 A|19 3.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:19: 5988614 - 6015126

 Exon Info From UCSC:
NM_001110504
NM_007600

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4218148Full LengthBC026138calpain 1
4923347Full LengthBC050276calpain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031626  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001110504 NP_001103974      
NM_007600 NP_031626 O35350
Q3TI07
EC 3.4.22.52 efhand
Peptidase_C2
Calpain_III

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF021847 AAB72222 O35350
Q3TI07
EC 3.4.22.52
AF084459 AAC33134 O35350 EC 3.4.22.52
BC026138 AAH26138 O35350
Q3TI07
EC 3.4.22.52
BC050276 AAH50276 Q80Y25  
AK088547 BAC40416 Q8C2J1  
AK149090 BAE28737 Q3UF24  
AK150084 BAE29293 Q3UDG8  
AK160940 BAE36103 O35350
Q3TI07
EC 3.4.22.52
AK168063 BAE40039 O35350
Q3TI07
EC 3.4.22.52
AK171405 BAE42435 Q3TB79  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Capn1 NP_001103974 R.norvegicus Capn1 29153   NP_062025 98
H.sapiens CAPN1 823 Gene Info NP_001185797 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta