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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Supt4h1, suppressor of Ty 4 homolog 1 (S. cerevisiae)
Sequence ID:NM_009296
Entrez Gene ID:20922
Ensembl ID:ENSMUSG00000020485

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lymphoreticular, mammary gland, muscle, nervous, ovary, placenta, pooled tissue, prostate, retina, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 C|11 49.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 87737552 - 87743614

NM_009296 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11048755106687551169
1052118755166887551774
2122678755629787556352
2683218755655987556612
3226938755674787557118

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5011064Full LengthBC024391suppressor of Ty 4 homolog 1 (S. cerevisiae)
6592996Full LengthBC061174suppressor of Ty 4 homolog 1 (S. cerevisiae)
9055704Full LengthBC141092suppressor of Ty 4 homolog 1 (S. cerevisiae)
30308013Full LengthBC087923suppressor of Ty 4 homolog 1 (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033322  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009296 NP_033322 P63271 Spt4

Related Sequences

 
mRNAGenPeptSwissProt
U43154 AAB18730 P63271
BC024391 AAH24391 P63271
BC061174 AAH61174 P63271
BC087923 AAH87923 P63271
BC141092 AAI41093 P63271
AK167941 BAE39944 P63271

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Supt4h1 NP_033322 H.sapiens SUPT4H1 6827 Gene Info NP_003159 100
R.norvegicus Supt4h1 287608   NP_001099298 100
A.gambiae AgaP_AGAP005428 1276125   XP_315434 66
D.melanogaster spt4 36387   NP_610802 63
C.elegans spt-4 175172   NP_497135 58
N.crassa NCU03838 3876744   XP_960597 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)