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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col7a1, collagen, type VII, alpha 1
Sequence ID:NM_007738
Entrez Gene ID:12836
Ensembl ID:ENSMUSG00000025650

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F2|9 61.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 108969698 - 108979883

 Exon Info From UCSC:
NM_007738

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5347384IncompleteBC061507collagen, type VII, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031764  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007738 NP_031764 Q63870 Kunitz_BPTI
fn3
VWA
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
S63654 AAB27492 Q63870
U32107 AAB66593 Q63870
BC061507 AAH61507 Q6P7U1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col7a1 NP_031764 R.norvegicus Col7a1 301012   NP_001100328 93
H.sapiens COL7A1 1294 Gene Info NP_000085 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)