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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Snx17, sorting nexin 17
Sequence ID:NM_153680
Entrez Gene ID:266781
Ensembl ID:ENSMUSG00000029146

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 B1|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 31193302 - 31198898

 Exon Info From UCSC:
NM_153680

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4986268Full LengthBC026571sorting nexin 17
5352355Full LengthBC023732sorting nexin 17
5324085IncompleteBC023925sorting nexin 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_710147  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_153680 NP_710147 Q8BVL3 PX

Related Sequences

 
mRNAGenPeptSwissProt
BC023732 AAH23732 Q8BVL3
BC026571 AAH26571 Q8BVL3
AK077650 BAC36927 Q8BVL3
AK077780 BAC37004 Q8BVL3
AK156299 BAE33663 Q8BVL3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Snx17 NP_710147 H.sapiens SNX17 9784 Gene Info NP_055563 99
R.norvegicus Snx17 298836   NP_001011981 99
A.gambiae AgaP_AGAP011491 1278369   XP_317811 47
D.melanogaster CG5734 34354   NP_609353 43
C.elegans F17H10.3 184624   NP_001076762 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)