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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cstb, Cystatin B
Sequence ID:NM_007793
Entrez Gene ID:13014
Ensembl ID:ENSMUSG00000005054

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 C1|10 42.0

Chromosomal Position (from UCSC)

Chromosomal Position:10: 78425706 - 78427619

NM_007793 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11887788841477888601
1892907788967177889772
2916027789005577890366

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5713930Full LengthBC056170cystatin B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031819  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007793 NP_031819 Q62426 Cystatin

Related Sequences

 
mRNAGenPeptSwissProt
BC056170 AAH56170 Q62426
AK002403 BAB22074 Q62426
AK151205 BAE30202 Q62426

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cstb NP_031819 R.norvegicus Cstb 25308   NP_036970 86
H.sapiens CSTB 1476 Gene Info NP_000091 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)