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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Usp49, ubiquitin specific peptidase 49
Sequence ID:NM_198421
Entrez Gene ID:224836
Ensembl ID:ENSMUSG00000090115

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 C|17

Chromosomal Position (from UCSC)

Chromosomal Position:17: 47611588 - 47650289

NM_198421 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12264776763847767863
2273004778689847786971
30116754780899247810366
167618804781166447811868
188119894781579247815900
199021954781661247816817
219655814781763047821015

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6406180Full LengthBC060712ubiquitin specific peptidase 49

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_940813  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_020048 NP_064432 Q9R0X0   TATA_RF
NM_198421 NP_940813 Q6P9L4 EC 3.4.19.12 UCH
zf-UBP

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC060122 AAH60122 Q9R0X0  
BC060712 AAH60712 Q6P9L4 EC 3.4.19.12
AK043396 BAC31536 Q9R0X0  
AK082872 BAC38663 Q8BUQ6  
AK146345 BAE27098 Q9R0X0  
AK019130 BAE43254 Q9R0X0  
AJ245617 CAB53514 Q9R0X0  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Usp49 NP_940813 R.norvegicus Usp49 316211   NP_001129942 97
H.sapiens USP49 25862 Gene Info NP_061031 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)