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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Cs, citrate synthase
Sequence ID:NM_026444
Entrez Gene ID:12974
Ensembl ID:ENSMUSG00000005683

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 D3|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 128337917 - 128361132

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2655044Full LengthBC029754citrate synthase
4237940Full LengthBC013554citrate synthase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080720  

Protein Infomation

NM_026444 NP_080720 Q9CZU6 EC Citrate_synt

Related Sequences

BC013554 AAH13554 Q9CZU6 EC
BC029754 AAH29754 Q9CZU6 EC
DQ403125 ABD77258 Q0QEL9  
AK012151 BAB28063 Q9CZU6 EC
AB056479 BAB63945 Q9CZU6 EC
AK145643 BAE26560 Q9CZU6 EC
AK149990 BAE29218 Q9CZU6 EC
AK163273 BAE37268 Q9CZU6 EC
AK166814 BAE39041 Q9CZU6 EC
AK167125 BAE39273 Q9CZU6 EC

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Cs NP_080720 R.norvegicus Cs 170587   NP_570111 97
H.sapiens CS 1431 Gene Info NP_004068 94
A.gambiae AgaP_AGAP012048 1280620   XP_320478 75
D.melanogaster kdn 31579   NP_572319 73
C.elegans cts-1 176437   NP_499264 71
A.thaliana ATCS 819042   NP_850415 63
S.cerevisiae CIT2 850361   NP_009931 59

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta