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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Shh, Sonic hedgehog
Sequence ID:NM_009170
Entrez Gene ID:20423
Ensembl ID:ENSMUSG00000002633

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 B1|5 16.0

Chromosomal Position (from UCSC)

Chromosomal Position:5: 28466496 - 28467256

NM_009170 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
6118242878337928785142
182520862878786128788122
208727272879300028793640

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6516263Full LengthBC063087sonic hedgehog

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033196  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009170 NP_033196 Q62226 Hint
HH_signal

Related Sequences

 
mRNAGenPeptSwissProt
BC063087 AAH63087 Q62226
EU664592 ACD69663 B3GAP8
AK077688 BAC36956 Q62226
X76290 CAA53922 Q62226

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Shh NP_033196 R.norvegicus Shh 29499   NP_058917 97
H.sapiens SHH 6469 Gene Info NP_000184 93
A.gambiae AgaP_AGAP001412 1281764   XP_321721 54
D.melanogaster hh 42737   NP_001034065 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta