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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Opn1sw, opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)
Sequence ID:NM_007538
Entrez Gene ID:12057
Ensembl ID:ENSMUSG00000058831

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 A3.3|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 29377385 - 29380475

NM_007538 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1114012932667029328060
140216412932873029328969
164218072932932229329487
180819762932971829329886
197724202933006929330512

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4511808Full LengthBC026021opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)
6489727Full LengthBC058267opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031564  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007538 NP_031564 P51491 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
U49720 AAA92458 P51491
AF190670 AAG17989 P51491
BC026021 AAH26021 P51491
BC058267 AAH58267 P51491

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Opn1sw NP_031564 R.norvegicus Opn1sw 81644   NP_112277 96
H.sapiens OPN1SW 611 Gene Info NP_001699 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)