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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sptlc2, serine palmitoyltransferase, long chain base subunit 2
Sequence ID:NM_011479
Entrez Gene ID:20773
Ensembl ID:ENSMUSG00000021036

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12|12 E

Chromosomal Position (from UCSC)

Chromosomal Position:12: 87305060 - 87309422

 Exon Info From UCSC:
NM_011479

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3483158Full LengthBC003227serine palmitoyltransferase, long chain base subunit 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035609  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_011479 NP_035609 Q542D6
P97363
EC 2.3.1.50 Aminotran_1_2

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U27455 AAC53310 Q542D6
P97363
EC 2.3.1.50
BC003227 AAH03227 Q542D6
P97363
EC 2.3.1.50
AK042149 BAC31185 Q8C9F8  
AK044917 BAC32140 Q542D6
P97363
EC 2.3.1.50
AK080181 BAC37842 Q8BNV0  
AK089019 BAC40704 Q542D6
P97363
EC 2.3.1.50
AK172965 BAD32243 Q6A053  
AK133728 BAE21805 Q3UZQ0  
AK139681 BAE24102 Q3UT78  
AK159346 BAE35008 Q542D6
P97363
EC 2.3.1.50
X95642 CAA64898 Q542D6
P97363
EC 2.3.1.50

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sptlc2 NP_035609 R.norvegicus Sptlc2 366697   NP_001032174 99
H.sapiens SPTLC2 9517 Gene Info NP_004854 96
A.gambiae AgaP_AGAP007941 1278014   XP_317536 59
D.melanogaster lace 34910   NP_476614 59
C.elegans sptl-2 266646   NP_505064 56
N.crassa NCU00447 3872913   XP_956766 52
S.pombe lcb2 3361415   NP_001018279 51
S.cerevisiae LCB2 851634   NP_010347 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)