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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Lhx5, LIM homeobox protein 5
Sequence ID:NM_008499
Entrez Gene ID:16873
Ensembl ID:ENSMUSG00000029595

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 F|5 64.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 120431900 - 120441455

NM_008499 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1568120881894120882461
569792120884499120884722
7931070120885359120885636
10711236120886316120886481
12372736120889966120891465

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6414270Full LengthBC057585LIM homeobox protein 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032525  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008499 NP_032525 Q543P4
P61375
Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
U61155 AAC52842 Q543P4
P61375
BC057585 AAH57585 Q543P4
P61375
AK033927 BAC28517 Q543P4
P61375
AK048778 BAC33455 Q543P4
P61375
AK140208 BAE24281 Q543P4
P61375

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lhx5 NP_032525 R.norvegicus Lhx5 124451   NP_620605 100
H.sapiens LHX5 64211 Gene Info NP_071758 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)