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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nptx1, Neuronal pentraxin 1
Sequence ID:NM_008730
Entrez Gene ID:18164
Ensembl ID:ENSMUSG00000025582

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E1-E2|11 75.0

Chromosomal Position (from UCSC)

Chromosomal Position:11: 119538999 - 119541355

NM_008730 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13976119400032119404007
39774156119404495119404674
41574401119405905119406149
44024609119407965119408172
46105284119408459119409133

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862040Full LengthBC139018neuronal pentraxin 1
8862042Full LengthBC139020neuronal pentraxin 1
30947054Full LengthBC093479neuronal pentraxin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032756  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008730 NP_032756 Q62443 Pentaxin

Related Sequences

 
mRNAGenPeptSwissProt
BC093479 AAH93479 A2ACL9
BC139018 AAI39019 A2ACL9
BC139020 AAI39021 A2ACL9
AK140128 BAE24247 Q3UST4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nptx1 NP_032756 R.norvegicus Nptx1 266777   NP_714957 99
H.sapiens NPTX1 4884 Gene Info NP_002513 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)