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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Syt2, synaptotagmin II
Sequence ID:NM_009307
Entrez Gene ID:20980
Ensembl ID:ENSMUSG00000026452

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 E4|1 73.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 134646676 - 134741829

NM_009307 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1155136543257136543411
156364136560366136560574
365568136637411136637614
569735136638386136638552
736855136640086136640205
8561023136640536136640703
10241191136640960136641127
11921309136642306136642423
13101443136643330136643463
14443386136644051136645993

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5362352Full LengthBC027019synaptotagmin II

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033333  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009307 NP_033333   C2

Related Sequences

 
mRNAGenPeptSwissProt
AF257304 AAF68988 P46097
BC027019 AAH27019 P46097
D37793 BAA07041 P46097
AB036514 BAA95588 Q9JM87
AK036357 BAC29397 P46097
AK220537 BAD90531 Q5DTI3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Syt2 NP_033333 R.norvegicus Syt2 24805   NP_036797 99
H.sapiens SYT2 127833 Gene Info NP_001129976 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)