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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Htr1f, 5-hydroxytryptamine (serotonin) receptor 1F
Sequence ID:NM_008310
Entrez Gene ID:15557
Ensembl ID:ENSMUSG00000050783

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 C1.3|16 38.8 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 64924728 - 65105854

NM_008310 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
122416492455464926794
224223496507394765074054
235025096510545065105609

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860623Full LengthBC1376045-hydroxytryptamine (serotonin) receptor 1F
40129430Full LengthBC1205075-hydroxytryptamine (serotonin) receptor 1F

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032336  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008310 NP_032336 Q543V2
Q02284
7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC120507 AAI20508 Q543V2
Q02284
BC137604 AAI37605 Q543V2
AK045364 BAC32328 Q543V2
Q02284
Z14224 CAA78593 Q543V2
Q02284

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Htr1f NP_032336 R.norvegicus Htr1f 60448   NP_068629 96
H.sapiens HTR1F 3355 Gene Info NP_000857 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)