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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Six2, Sine oculis-related homeobox 2 homolog (Drosophila)
Sequence ID:NM_011380
Entrez Gene ID:20472
Ensembl ID:ENSMUSG00000024134

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 E4|17 45.5

Chromosomal Position (from UCSC)

Chromosomal Position:17: 85682909 - 85685196

NM_011380 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
112468608360786084852
124721088608673286087593

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6394139Full LengthBC068021sine oculis-related homeobox 2 homolog (Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035510  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011380 NP_035510 Q62232 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
BC068021 AAH68021 Q62232
D83147 BAA11825 Q62232
AK142139 BAE24944  
X80338 CAA56584 Q62232

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Six2 NP_035510 R.norvegicus Six2 366542   XP_345631 100
H.sapiens SIX2 10736 Gene Info NP_058628 99
D.melanogaster so 35662   NP_476733 81
A.gambiae AgaP_AGAP011695 1280941   XP_320814 71
C.elegans ceh-33 191622   NP_504420 59

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)