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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Mmp13, matrix metallopeptidase 13
Sequence ID:NM_008607
Entrez Gene ID:17386
Ensembl ID:ENSMUSG00000050578

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9|9 A1-A2

Chromosomal Position (from UCSC)

Chromosomal Position:9: 7272526 - 7283328

NM_008607 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
116472725137272676
16540672727647273005
40755572738927274040
55668172742087274333
68284372765467276707
84496172779107278027
962109572788307278963
1096125572801257280284
1256135972808327280935
1360267472820177283331

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40129835Full LengthBC125320matrix metallopeptidase 13
40129837Full LengthBC125322matrix metallopeptidase 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032633  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008607 NP_032633 Q3U9V5
P33435
Hemopexin
Peptidase_M10
PG_binding_1

Related Sequences

 
mRNAGenPeptSwissProt
BC125320 AAI25321 Q3U9V5
BC125322 AAI25323 Q3U9V5
P33435
AY622973 AAT46404 Q6GX98
AK150728 BAE29805 Q3U9V5
P33435
AK151626 BAE30561 Q3U9V5
P33435
AK152507 BAE31273 Q3U9V5
P33435
AK152916 BAE31593 Q3U9V5
P33435
AK153458 BAE32010 Q3U5R7
AK155188 BAE33104 Q3U2N6
AK159921 BAE35483 Q3U9V5
P33435
AK160819 BAE36033 Q3U9V5
P33435
X66473 CAA47102 Q3U9V5
P33435

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Mmp13 NP_032633 R.norvegicus Mmp13 171052   NP_598214 97
H.sapiens MMP13 4322 Gene Info NP_002418 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)