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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tnfsf4, tumor necrosis factor (ligand) superfamily, member 4
Sequence ID:NM_009452
Entrez Gene ID:22164
Ensembl ID:ENSMUSG00000026700

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H2.1|1 84.9 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 161395581 - 161417338

NM_009452 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1306163325568163325873
307349163345098163345140
3501609163347077163348336

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100016505Full LengthBC153120tumor necrosis factor (ligand) superfamily, member 4
100015484BC148526tumor necrosis factor (ligand) superfamily, member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033478  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009452 NP_033478 P43488 TNF

Related Sequences

 
mRNAGenPeptSwissProt
U12763 AAA21871 P43488
BC148526 AAI48527  
BC153120 AAI53121  
FJ176943 ACI22376 B6DXE3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tnfsf4 NP_033478 R.norvegicus Tnfsf4 89814   NP_446004 81
H.sapiens TNFSF4 7292 Gene Info NP_003317 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta