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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lhx1, LIM homeobox protein 1
Sequence ID:NM_008498
Entrez Gene ID:16869
Ensembl ID:ENSMUSG00000018698

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 C|11 48.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 84517976 - 84521915

NM_008498 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15508433288084333429
5517168433378584333950
7179948433519284335469
99512218433556384335789
122227508433750784339035

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30363447Full LengthBC092374LIM homeobox protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032524  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008498 NP_032524 P63006 Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
S68107 AAC60669 P63006
BC092374 AAH92374 Q569N5
P63006
AK032067 BAC27679 Q8CCU9
AK080848 BAC38043 Q8BNR0
AK141086 BAE24561 Q3URX6
Z27410 CAA81797 P63006

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lhx1 NP_032524 H.sapiens LHX1 3975 Gene Info NP_005559 100
R.norvegicus Lhx1 257634   NP_665887 100
A.gambiae AgaP_AGAP011134 1270792   XP_309513 60
D.melanogaster Lim1 31813   NP_572505 55
C.elegans lin-11 172893   NP_492696 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)