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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cntn1, contactin 1
Sequence ID:NM_001159647
NM_001159648
NM_007727
Entrez Gene ID:12805
Ensembl ID:ENSMUSG00000055022

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F|15 55.1 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 92318040 - 92341313

 Exon Info From UCSC:
NM_001159647
NM_001159648
NM_007727

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30099512Full LengthBC066864contactin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031753  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001159647 NP_001153119    
NM_001159648 NP_001153120    
NM_007727 NP_031753 P12960 fn3
ig
I-set

Related Sequences

 
mRNAGenPeptSwissProt
BC066864 AAH66864 P12960
AY512913 AAR87784 Q6R5G9
AK045710 BAC32466 P12960
AK076273 BAC36282 P12960
AK134728 BAE22260 Q3UYF2
AK140433 BAE24385 Q3UYF2
AK004399 BAE43177 Q3UYF2
X14943 CAA33075 P12960

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cntn1 NP_001153120 R.norvegicus Cntn1 117258   NP_476459 99
H.sapiens CNTN1 1272 Gene Info NP_001834 95
C.elegans rig-6 173828   NP_001022014 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)