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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cxcr5, chemokine (C-X-C motif) receptor 5
Sequence ID:NM_007551
Entrez Gene ID:12145
Ensembl ID:ENSMUSG00000047880

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A5.2|9 25.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 44511786 - 44526421

NM_007551 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2225364431986944322383
253726364433440444334503

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1366773Full LengthBC064059chemochine (C-X-C motif) receptor 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031577  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007551 NP_031577 Q04683 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
L20332 AAA16852 Q04683
BC064059 AAH64059 Q04683
AK133064 BAE21492 Q3V0L2
AK155954 BAE33519 Q04683
AK156087 BAE33583 Q04683
AK157016 BAE33932 Q04683
X71788 CAA50673 Q04683

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cxcr5 NP_031577 R.norvegicus Cxcr5 29363   NP_445755 95
H.sapiens CXCR5 643 Gene Info NP_001707 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)