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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sdc4, syndecan 4
Sequence ID:NM_011521
Entrez Gene ID:20971
Ensembl ID:ENSMUSG00000017009

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H3|2 94.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 164424947 - 164443185

NM_011521 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11991164249746164251736
19922187164254392164254587
21882234164255179164255225
22352361164256686164256812
23622460164268589164268687

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3154160Full LengthBC005679syndecan 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035651  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011521 NP_035651 O35988
Q3U5S6
Syndecan

Related Sequences

 
mRNAGenPeptSwissProt
BC002312 AAH02312 Q99LM6
BC005679 AAH05679 O35988
Q3U5S6
D89571 BAA22135 O35988
Q3U5S6
AK134326 BAE22099 O35988
Q3U5S6
AK145805 BAE26660 Q3UKZ1
AK153445 BAE32000 O35988
Q3U5S6
AK159215 BAE34904 O35988
Q3U5S6
AK164952 BAE37978 O35988
Q3U5S6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sdc4 NP_035651 R.norvegicus Sdc4 24771   NP_036781 94
H.sapiens SDC4 6385 Gene Info NP_002990 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)