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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nanog, Nanog homeobox
Sequence ID:NM_028016
Entrez Gene ID:71950
Ensembl ID:ENSMUSG00000012396

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 F2|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 122707782 - 122713555

NM_028016 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1366122657585122657950
367632122661555122661820
633719122662646122662732
7201356122663159122663795

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860892Full LengthBC137873Nanog homeobox
9053543Full LengthBC144995Nanog homeobox
9053544Full LengthBC144996Nanog homeobox
40130294Full LengthBC132017Nanog homeobox

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028016 NP_082292 Q80Z64  

Related Sequences

 
mRNAGenPeptSwissProt
BC132017 AAI32018 A2RS90
BC137873 AAI37874 A2RS90
BC144995 AAI44996 B7ZN41
BC144996 AAI44997 A2RS90
AF507043 AAO67362 Q80Z64
AY278951 AAP92157 Q80Z64
AY455282 AAS57554 Q80Z64
AY455285 AAS57556 Q80Z64
AB093574 BAC76998 Q80Z64
AB126939 BAD72892  
AK010332 BAE43219 Q80Z64

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nanog NP_082292 R.norvegicus Nanog 414065   NP_001094251 85
H.sapiens NANOG 79923 Gene Info NP_079141 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)