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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Csgalnact1, chondroitin sulfate N-acetylgalactosaminyltransferase 1
Sequence ID:NM_001252623
NM_172753
Entrez Gene ID:234356
Ensembl ID:ENSMUSG00000036356

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8 B3.3|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 68357778 - 68735068

Transcript StartTranscript EndChromosomal Start Chromosomal End
119317088068170882611
193220137088596670886047
201421087089651870896612
210922877089743770897615
228823897091249470912595
239026067092520170925417
260735347098482270985749
353536837108087071081018
368438207116969771169833
382139377125892471259040

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30470205Full LengthBC089162chondroitin sulfate N-acetylgalactosaminyltransferase 1
4221323IncompleteBC057630RIKEN cDNA 4732435N03 gene
4975657IncompleteBC026599chondroitin sulfate N-acetylgalactosaminyltransferase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_766341  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001252623 NP_001239552      
NM_172753 NP_766341 Q8BJQ9 EC 2.4.1.174 CHGN

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC026599 AAH26599 Q8BJQ9 EC 2.4.1.174
BC089162 AAH89162 Q8BJQ9 EC 2.4.1.174
AK028688 BAC26066 Q8BJQ9 EC 2.4.1.174
AK033522 BAC28340 Q8BJQ9 EC 2.4.1.174
AK049770 BAC33912 Q8BJQ9 EC 2.4.1.174
AK080687 BAC37982 Q8BJQ9 EC 2.4.1.174
AK133567 BAE21729 Q8BJQ9 EC 2.4.1.174
AK144089 BAE25692 Q8BJQ9 EC 2.4.1.174

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Csgalnact1 NP_766341 R.norvegicus Csgalnact1 306375   NP_001100779 98
H.sapiens CSGALNACT1 55790 Gene Info NP_001123990 93
A.gambiae AgaP_AGAP007720 1269523   XP_564504 43
D.melanogaster CG12913 36079   NP_610567 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)