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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pdzk1, PDZ domain containing 1
Sequence ID:NM_021517
NM_001146001
Entrez Gene ID:59020
Ensembl ID:ENSMUSG00000038298

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F2.1|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 96830125 - 96870926

 Exon Info From UCSC:
NM_021517
NM_001146001

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4234949Full LengthBC013512PDZ domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067492  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001146001 NP_001139473    
NM_021517 NP_067492 Q9JIL4 PDZ

Related Sequences

 
mRNAGenPeptSwissProt
AF220100 AAF73863 Q9JIL4
BC013512 AAH13512 Q9JIL4
AF474247 AAL84634 Q9JIL4
AK006269 BAB24493 Q9JIL4
AK012070 BAB28007 Q9JIL4
AK014879 BAB29600 Q9JIL4
AK029752 BAC26598 Q9JIL4
AK029764 BAC26605 Q9JIL4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pdzk1 NP_067492 R.norvegicus Pdzk1 65144   NP_113900 92
H.sapiens PDZK1 5174 Gene Info NP_001188254 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta