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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Tdp1, tyrosyl-DNA phosphodiesterase 1
Sequence ID:NM_028354
Entrez Gene ID:104884
Ensembl ID:ENSMUSG00000021177

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12 E|12

Chromosomal Position (from UCSC)

Chromosomal Position:12: 99884618 - 99885146

 Exon Info From UCSC:
NM_028354

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4018534Full LengthBC019804tyrosyl-DNA phosphodiesterase 1
6402921Full LengthBC065162tyrosyl-DNA phosphodiesterase 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028354 NP_082630   Tyr-DNA_phospho

Related Sequences

 
mRNAGenPeptSwissProt
BC019804 AAH19804 Q8BJ37
BC065162 AAH65162 Q6P1B8
AK033868 BAC28500 Q8BJ37
AK079006 BAC37502 Q8C5A5
AK137004 BAE23203 Q8C5A5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tdp1 NP_082630 R.norvegicus Tdp1 314380   NP_001026827 93
H.sapiens TDP1 55775 Gene Info NP_001008744 82
D.melanogaster gkt 33530   NP_523465 42
A.thaliana TDP1 831369   NP_197021 41
C.elegans F52C12.1 176996   NP_500149 40
A.gambiae AgaP_AGAP010577 1275307   XP_558110 38
N.crassa NCU06345 3878518   XP_962379 37
S.pombe tdp1 2539579   NP_587861 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)