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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Pax6, paired box gene 6
Sequence ID:NM_001244198
NM_001244200
NM_001244201
NM_001244202
NM_013627
Entrez Gene ID:18508
Ensembl ID:ENSMUSG00000027168

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E3|2 58.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 105675108 - 105675886


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4008490Full LengthBC011272paired box gene 6
4504106Full LengthBC036957paired box gene 6
6309201IncompleteBC069912paired box gene 6

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001244198 NP_001231127    
NM_001244200 NP_001231129    
NM_001244201 NP_001231130    
NM_001244202 NP_001231131    
NM_013627 NP_038655   Homeobox
PAX

Related Sequences

 
mRNAGenPeptSwissProt
M77842 AAA40109 P63015
BC011272 AAH11272 P63015
BC036957 AAH36957 P63015
AF443223 AAL38015 Q8VHL9
AY064175 AAL40860 Q8VBX9
AF457141 AAL67742 Q8VBX9
AF457142 AAL67743 Q8VHH9
AK028059 BAC25729 P63015
AK139054 BAE23875 Q3UTV5
AK162553 BAE36966 Q3TRR1
X63963 CAA45379 P63015
X63963 CAA45380 P63015
AJ292077 CAC83743 Q8VBZ1
AJ307468 CAC83748 Q8VBY9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pax6 NP_038655 H.sapiens PAX6 5080 Gene Info NP_001595 100
R.norvegicus Pax6 25509   NP_037133 100
A.gambiae AgaP_AGAP000067 1272206   XP_311087 71
D.melanogaster toy 43833   NP_524638 65
C.elegans vab-3 181251   NP_001024570 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)