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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Timp3, tissue inhibitor of metalloproteinase 3
Sequence ID:NM_011595
Entrez Gene ID:21859
Ensembl ID:ENSMUSG00000020044

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 C1-D1|10 47.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 86300554 - 86347053

NM_011595 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15638576315685763718
5646468580111785801199
6477588580667785806788
7598808580729885807419
88146818580844985812249

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4239015Full LengthBC014713tissue inhibitor of metalloproteinase 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035725  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011595 NP_035725 Q54AE5
P39876
TIMP

Related Sequences

 
mRNAGenPeptSwissProt
L27424 AAA40447 Q54AE5
P39876
L19622 AAC37669 Q54AE5
P39876
BC014713 AAH14713 P39876
AY622855 AAT46410 Q6GXA7
AB041611 BAA95094 Q54AE5
P39876
AK083905 BAC39055 Q54AE5
P39876
AK147847 BAE28178 Q54AE5
P39876
Z30970 CAA83218 Q54AE5
P39876

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Timp3 NP_035725 R.norvegicus Timp3 25358   NP_037018 99
H.sapiens TIMP3 7078 Gene Info NP_000353 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta