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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Scd2, stearoyl-Coenzyme A desaturase 2
Sequence ID:NM_009128
Entrez Gene ID:20250
Ensembl ID:ENSMUSG00000025203

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19 C3|19 43.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:19: 44305006 - 44306855

NM_009128 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17364436816544368900
73710194436939344369675
102011504437252944372659
115113564437409844374303
135715894437570144375933
159054514437749044381351

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3155869Full LengthBC040384stearoyl-Coenzyme A desaturase 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033154  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009128 NP_033154 P13011 EC 1.14.19.1 FA_desaturase

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M26270 AAA40094 P13011 EC 1.14.19.1
BC040384 AAH40384 P13011 EC 1.14.19.1
AK083922 BAC39066 P13011 EC 1.14.19.1
AK147406 BAE27893 P13011 EC 1.14.19.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scd2 NP_033154 R.norvegicus Scd 83792   NP_114029 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)