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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc10a1, solute carrier family 10 (sodium/bile acid cotransporter family), member 1
Sequence ID:NM_001177561
NM_011387
Entrez Gene ID:20493
Ensembl ID:ENSMUSG00000021135

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12 D1|12 37.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:12: 80953188 - 80968004

 Exon Info From UCSC:
NM_001177561
NM_011387

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4160598Full LengthBC094023solute carrier family 10 (sodium/bile acid cotransporter family), member 1
4162098Full LengthBC021154solute carrier family 10 (sodium/bile acid cotransporter family), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035517  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001177561 NP_001171032 O08705  
NM_011387 NP_035517 O35940 SBF

Related Sequences

 
mRNAGenPeptSwissProt
U95131 AAB81023 O08705
U95132 AAB81024 O35940
BC021154 AAH21154 O08705
BC094023 AAH94023 O08705
AB003303 BAA19846 O08705

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc10a1 NP_001171032 R.norvegicus Slc10a1 24777   NP_058743 91
H.sapiens SLC10A1 6554 Gene Info NP_003040 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)