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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Tmem30a, transmembrane protein 30A
Sequence ID:NM_133718
Entrez Gene ID:69981
Ensembl ID:ENSMUSG00000032328

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, synovium, t-cell, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 E1|9 42.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 79770796 - 79793301

NM_133718 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2425597961675079619285
256027697962189979622108
277029197962290879623057
292030077962395979624046
300831157962503079625137
311632237962834779628454
322436807964078079641236

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2648510Full LengthBC018367transmembrane protein 30A
2651602Full LengthBC018491transmembrane protein 30A
3669745IncompleteBC026136transmembrane protein 30A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598479  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_133718 NP_598479 Q8VEK0 CDC50

Related Sequences

 
mRNAGenPeptSwissProt
BC018367 AAH18367 Q8VEK0
BC018491 AAH18491 Q8VEK0
BC026136 AAH26136 Q8VEK0
AK077065 BAC36588 Q8VEK0
AK150071 BAE29283 Q8VEK0
AK159364 BAE35022 Q8VEK0
AK170171 BAE41615 Q8VEK0
AK170697 BAE41961 Q8VEK0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tmem30a NP_598479 R.norvegicus Tmem30a 300857   NP_001004248 96
H.sapiens TMEM30A 55754 Gene Info NP_060717 89
D.melanogaster CG9947 32615   NP_573128 59
C.elegans R08C7.2 177213   NP_001023332 53
A.gambiae AgaP_AGAP000704 1272291   XP_311234 52
S.pombe mug89 2539922   NP_595126 44
S.cerevisiae YNR048W 855784   NP_014446 39
N.crassa NCU01165 3877727   XP_961531 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)