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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rab7, RAB7, member RAS oncogene family
Sequence ID:NM_009005
Entrez Gene ID:19349
Ensembl ID:ENSMUSG00000079477

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 D1|6 38.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 88000434 - 88013690

NM_009005 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1968795042887950523
972258795416487954292
2264448795498687955204
4455718796230087962426
5726248796363187963683

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3584891Full LengthBC004597RAB7, member RAS oncogene family
6414012Full LengthBC086793RAB7, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033031  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009005 NP_033031   Ras
MMR_HSR1
Miro

Related Sequences

 
mRNAGenPeptSwissProt
BC004597 AAH04597 P51150
Q4FJQ0
BC086793 AAH86793 P51150
Q4FJQ0
AK005004 BAB23738 P51150
Q4FJQ0
AK139914 BAE24180 P51150
Q4FJQ0
AK148117 BAE28355 P51150
Q4FJQ0
AK151078 BAE30093 P51150
Q4FJQ0
AK152666 BAE31401 P51150
Q4FJQ0
AK154234 BAE32452 P51150
Q4FJQ0
AK158971 BAE34750 P51150
Q4FJQ0
AK159928 BAE35490 P51150
Q4FJQ0
AB232599 BAF02861 Q4FJQ0
X89650 CAA61797 P51150
CT010352 CAJ18560 P51150
Q4FJQ0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rab7 NP_033031 R.norvegicus Rab7a 29448   NP_076440 100
H.sapiens RAB7A 7879 Gene Info NP_004628 100
A.gambiae AgaP_AGAP001617 1281557   XP_321482 83
N.crassa NCU03711 3877651   XP_961487 78
D.melanogaster Rab7 42841   NP_524472 76
A.thaliana RAB7B 821415   NP_188512 69
A.thaliana RABG3E 841353   NP_001031161 68
S.pombe ypt7 2540763   NP_596307 67
S.cerevisiae YPT7 855012   NP_013713 65

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta